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View Structure Prediction Details

Protein: AOX1A_ARATH
Organism: Arabidopsis thaliana
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AOX1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|11278947, gi|... - gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana], pir||T51615 alternative respi...
559.0 [0..1] [354..1]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMITRGGAKA AKSLLVAAGP RLFSTVRTVS SHEALSASHI LKPGVTSAWI WTRAPTIGGM  60
   61 RFASTITLGE KTPMKEEDAN QKKTENE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STGGDAAGGN NKGDKGIASY WGVEPNKITK EDGSEWKWNC FRPWETYKAD ITIDLKKHHV  60
   61 PTTFLDRIAY WTVKSLRWPT DLFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [172-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRRYGCRAMM LETVAAVPGM VGGMLLHCKS LRRFEQSGGW IKALLEEAEN ERMHLMTFME  60
   61 VAKPKWYERA LVITVQGVFF NAYFLGYLIS PKFAHRMVGY LEEEAIHSYT EFLKELDKGN 120
  121 IENVPAPAIA IDYWRLPADA TLRDVVMVVR ADEAHHRDVN HFASDIHYQG RELKEAPAPI 180
  181 GYH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.21
Match: 2oh3A
Description: No description for 2oh3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle