YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ATHB7_ARATH
Organism: Arabidopsis thaliana
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATHB7_ARATH.

Description E-value Query
Range
Subject
Range
gi|499164, gi|629527 - gi|629527|pir||S47137 homeotic protein Athb-7 - Arabidopsis thaliana, gi|499164|emb|CAA47425.1| unna...
177.0 [0..1] [258..10]

Back

Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV  60
   61 QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1b72A
Description: Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [102-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLASQFESLK KEKQALVSEL QRLKEATQKK TQEEERQCSG DQAVVALSST HHESENEENR  60
   61 RRKPEEVRPE MEMKDDKGHH GVMCDHHDYE DDDNGYSNNI KREYFGGFEE EPDHLMNIVE 120
  121 PADSCLTSSD DWRGFKSDTT TLLDQSSNNY PWRDFWS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle