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View Structure Prediction Details

Protein: AROF_ARATH
Organism: Arabidopsis thaliana
Length: 525 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROF_ARATH.

Description E-value Query
Range
Subject
Range
gi|166688 - gi|166688|gb|AAA32784.1| 3-deoxy-D-arabino-heptulosonate y-phosphate synthase
941.0 [0..1] [525..1]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS  60
   61 VKESVASSSS GAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [74-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWTPESWKLK KALQLPDYPN ANELESVLKT IEAFPPIVFA GEARNLEERL ADAAVGKAFL  60
   61 LQGGDCAESF KEFNATNIRD TFRVLLQMSI VLTFGGQVPV IKVGRMAGQF AKPRSDAFEE 120
  121 KDGVKLPSYK GDNINGDTFD EKSRIPDPNR MIRAYTQSAA TLNLLRAFAT GGYAAIQRVT 180
  181 QWNLDFVEQS EQADRYQELA NRVDEALGFM SACGLGTDHP LMTTTDFYTS HECLLLPYEQ 240
  241 SLTRLDSTSG LYYDCSAHMV WCGERTRQLD GAHVEFLRGI ANPLGIKVSN KMDPFELVKL 300
  301 VEILNPNNKP GRITVIVRMG AENMRVKLPH LIRAVRRSGQ IVTWVCDPMH GNTIKAPCGL 360
  361 KTRAFDSILA EVRAFLDVHE QEGSHAGGIH LEMTGQNVTE CIGGSRTVTY DDLSSRYHTH 420
  421 CDPRLNASQS LELAFIVAER LRKRRTGSQR VS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2b7oA
Description: The Structure of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 3.04075198078553 bayes_pls_golite062009
3-deoxy-7-phosphoheptulonate synthase activity 2.96394105633886 bayes_pls_golite062009
lyase activity 1.40463692440932 bayes_pls_golite062009
dihydrodipicolinate synthase activity 1.2687335039487 bayes_pls_golite062009
oxo-acid-lyase activity 0.550191215286759 bayes_pls_golite062009
carbon-carbon lyase activity 0.21317671520101 bayes_pls_golite062009
3-deoxy-8-phosphooctulonate synthase activity 0.11229304382048 bayes_pls_golite062009
carbon-oxygen lyase activity 0.0228214205561801 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle