YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ALG8_ARATH
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALG8_ARATH.

Description E-value Query
Range
Subject
Range
gi|47124844, gi|... - gi|47124844|gb|AAH70861.1| MGC84618 protein [Xenopus laevis], gi|147901994|ref|NP_001084808.1| hypot...
432.0 [0..4] [381..24]

Back

Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHREKSDRR LLLWFFAVAT AVKLLLIPSS RSTDFEVHRN WLAITNSLPL TKWYFDETSQ  60
   61 WTLDYPPFFA YFERFLSIFA RLVDPRIVDL QSGLDYNAES VIYFQRISVI VSDLCLLYGV 120
  121 YRLTRKLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLKRNLICAL VIWSPGLLIV DHIHFQYNGF LLGWLLLSIS FLQEGRDLLV TGFRRLVTIG  60
   61 AVVVAVFAAA YGPFIYHGQI QQVISRMFPF GRGLCHAYWA PNFWVFYIIL DKGLAVLLRK 120
  121 LGYEIQIPSA SFTGGLVGDS SPFAVLPQIT PLTTFAMVLL AISPCLIKAW KKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [302-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSGLVARWVA YAYTCGFLFG WHVHEKASLH FTIPLAIVAV QSLEDAKHYF LVSIVSCYSL  60
   61 YPLLYEPRST RSRFCCCYCI PW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle