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View Structure Prediction Details

Protein: xbx-7
Organism: Caenorhabditis elegans
Length: 485 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for xbx-7.

Description E-value Query
Range
Subject
Range
gi|114669526 - gi|114669526|ref|XP_001172592.1| PREDICTED: Meckel syndrome, type 1 isoform 3 [Pan troglodytes]
554.0 [0..11] [441..68]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLSSTFGF AGSVDRLSIR VQLFQKGIQS LDFDRFNQDN NVIDERPSKS RLDDVTFKWK  60
   61 QKVGRAENSN RRIFTLRDGD EFPDYLSRFK PTEVSEPAEN KKESEYPHND YIVYRKSAAS 120
  121 RPTIKKSYLY IFARLGPMDI EDPSAVELIS RITVTDTNRL TVEPAINQAD DEGIVLETKF 180
  181 GDYTVKIQID DVENEKSTED QLTSIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [207-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESETFMAARD GLVETVVHVK LIKGVNFLFD EGLTIDYKLQ MPRGIKLKSE NATGRSQRYS  60
   61 SAEQDGGDIN FGYFLEFVFE SRNTDFCPLL MLRFMAVDYW GRQYIAGYGS GYVSLTPGKS 120
  121 LSKIHLWRPI SHNSLYEMFV GQAIDIDYFG TPKSSLERVG RDGQPSGIVI MKTDCVA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [384-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSRQFMARDI LYQLKYGSKM ADMGLRSDFY QRIIKVLMEF EEARSKLIIA RAINKKKIKI  60
   61 EYGQRLKVLP NGEIVLQCTP VMGRKSRSTC EKMYRVRCHS IH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle