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View Structure Prediction Details

Protein: gi|7474798, gi|1...
Organism: Bacillus subtilis
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7474798, gi|1....

Description E-value Query
Range
Subject
Range
gi|49184786, gi|... - gi|49184786|ref|YP_028038.1| hypothetical protein BAS1774 [Bacillus anthracis str. Sterne], gi|49178...
gi|47502355, gi|... - gi|47527207|ref|YP_018556.1| hypothetical protein GBAA1912 [Bacillus anthracis str. 'Ames Ancestor']...
gi|30261944, gi|... - gi|30261944|ref|NP_844321.1| hypothetical protein BA1912 [Bacillus anthracis str. Ames], gi|30256570...
465.0 [0..1] [537..1]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNRWWIIL LLFLVFLPKT SFAHAYIVKS SPGENSELKS APAQVEIEFN EPVEEGFHYI  60
   61 KVYNSNGDRL DTDKTEIKKD NHHIMTVKLK KNLPKDVYRA EWNAVSADGH PVSGVIPFSI 120
  121 GKAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1ix2A
Description: Copper resistance protein C (CopC, PcoC)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGFSSQKAAD SALNPGTAAD RAILYTALSL FIGTVFFHLF WYKGKSEQLV KRTRRILTGS  60
   61 IAALGLALLL QLPIQTKANA GGGWGSAFQP GYIRETLFET AGGSIWIIQA ALFVLLALSV 120
  121 IPAIRKNRFS SFGYWTAPLI FFFGLLLAKA FTGHAAV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [282-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEKTVGILM DFLHLTSASI WVGGIAALVL LLSKEWRQPD KTLAWETVRR FSPWALTAVG  60
   61 VILFSGLLNG FFIIRSMDSL FHTAYGQALL VKSGLFVFML VLGAIHFLLT RKQRRTGISR 120
  121 TLKAEWAIGI AVLITAAVFT SLPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEPAPEPFY QTKAIENGQS VSLSISPNQP GKNVFELRVT DHNGDPVKNI QQITLTVYKT  60
   61 GLSGSENKST FTLKEKTKGV FQDQNLSINE KGNWKIKVHG LTGDFNEINI MFTKTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle