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View Structure Prediction Details

Protein: gi|7474798, gi|1...
Organism: Bacillus subtilis
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7474798, gi|1....

Description E-value Query
Range
Subject
Range
gi|49184786, gi|... - gi|49184786|ref|YP_028038.1| hypothetical protein BAS1774 [Bacillus anthracis str. Sterne], gi|49178...
gi|47502355, gi|... - gi|47527207|ref|YP_018556.1| hypothetical protein GBAA1912 [Bacillus anthracis str. 'Ames Ancestor']...
gi|30261944, gi|... - gi|30261944|ref|NP_844321.1| hypothetical protein BA1912 [Bacillus anthracis str. Ames], gi|30256570...
465.0 [0..1] [537..1]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNRWWIIL LLFLVFLPKT SFAHAYIVKS SPGENSELKS APAQVEIEFN EPVEEGFHYI  60
   61 KVYNSNGDRL DTDKTEIKKD NHHIMTVKLK KNLPKDVYRA EWNAVSADGH PVSGVIPFSI 120
  121 GKAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1ix2A
Description: Copper resistance protein C (CopC, PcoC)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGFSSQKAAD SALNPGTAAD RAILYTALSL FIGTVFFHLF WYKGKSEQLV KRTRRILTGS  60
   61 IAALGLALLL QLPIQTKANA GGGWGSAFQP GYIRETLFET AGGSIWIIQA ALFVLLALSV 120
  121 IPAIRKNRFS SFGYWTAPLI FFFGLLLAKA FTGHAAV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [282-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEKTVGILM DFLHLTSASI WVGGIAALVL LLSKEWRQPD KTLAWETVRR FSPWALTAVG  60
   61 VILFSGLLNG FFIIRSMDSL FHTAYGQALL VKSGLFVFML VLGAIHFLLT RKQRRTGISR 120
  121 TLKAEWAIGI AVLITAAVFT SLPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEPAPEPFY QTKAIENGQS VSLSISPNQP GKNVFELRVT DHNGDPVKNI QQITLTVYKT  60
   61 GLSGSENKST FTLKEKTKGV FQDQNLSINE KGNWKIKVHG LTGDFNEINI MFTKTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle