YRC Public Data Repository - Protein Structure Prediction

Protein:	rhp16
Organism:	Schizosaccharomyces pombe
Length:	963 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp16.

Description	E-value	Query Range	Subject Range
RHP16_SCHPO - ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV... gi\|14195095 - gi\|14195095\|sp\|P79051.2\|RHP16_SCHPO RecName: Full=ATP-dependent helicase rhp16; AltName: Full=DNA re...	459.0	[0..104]	[963..2]
gi\|42552706, gi\|... - gi\|46123053\|ref\|XP_386080.1\| hypothetical protein FG05904.1 [Gibberella zeae PH-1], gi\|42552706\|gb\|E... gi\|116090833 - gi\|116090833\|gb\|ABJ55998.1\| RING-11 protein [Gibberella zeae]	388.0	[0..3]	[961..107]
gi\|71018359, gi\|... - gi\|71018359\|ref\|XP_759410.1\| hypothetical protein UM03263.1 [Ustilago maydis 521], ref\|XP_400878.1\| ...	380.0	[0..10]	[962..79]
gi\|16944468, gi\|... - gi\|32404678\|ref\|XP_322952.1\| hypothetical protein ( (AL451013) probable nucleotide exsicion repair p... gi\|85102654 - gi\|85102654\|ref\|XP_961377.1\| DNA repair protein RAD16 [Neurospora crassa OR74A]	365.0	[0..2]	[961..64]
gi\|44982265, gi\|... - gi\|45187527\|ref\|NP_983750.1\| ADL345Cp [Ashbya gossypii ATCC 10895], gi\|44982265\|gb\|AAS51574.1\| ADL34... gi\|44982265 - gi\|44982265\|gb\|AAS51574.1\| ADL345Cp [Ashbya gossypii ATCC 10895]	363.0	[0..296]	[963..81]
gi\|145013403, gi... - gi\|39978259\|ref\|XP_370517.1\| hypothetical protein MGG_07014 [Magnaporthe grisea 70-15], gb\|EAA55357....	356.0	[0..82]	[961..86]
orf19.2969, orf1... - RAD16 CGDID:CAL0006085 Assembly 19, Contig19-10163 (88636, 91194) CDS, translated using codon table ... gi\|68469363, gi\|... - gi\|68469363\|ref\|XP_721196.1\| hypothetical protein CaO19.10486 [Candida albicans SC5314], gi\|68468819...	354.0	[0..133]	[963..2]
RAD16 - Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleot... RAD16_YEAST - DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1	353.0	[0..210]	[963..43]

Back

Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHISTLKVDQ LQNEAVDINS NDTIDSINWK NTRNNHTTQA SLQADNNDEQ SNGQAPFSTT  60
   61 YSEINNIHDV PGNQDEWSSS PIAGIIVESE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEEVVENNLH SQMGTSCNKI NSNSNKGKEN MHFVLDDNGD SKGNASNQQV ERDDKLDMET  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [151-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRWNGKEFEE PLSTNKKLII QSNNTSSQHS TPPLSISDTS THTGSSTDNV EANPNTGFSS  60
   61 ARKRSLRSSN LKKKFVPLSS PEESNESEFI DDDESDEVAS IIDIKEDETF DSKVEIPEAA 120
  121 PSSSTESDEE SIPLSYQSKR RRVSARASSS ASSSSRTQAK SIPSHERTHY RLIRQHPELE 180
  181 HVWEKLEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [339-870]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPREVKQIE QPKELVLNLL PFQREGVYWL KRQEDSSFGG GILADEMGMG KTIQTIALLL  60
   61 SEPRGKPTLV VAPVVAIMQW KEEIDTHTNK ALSTYLYYGQ ARDISGEELS SYDVVLTSYN 120
  121 VIESVYRKER SGFRRKNGVV KEKSLLHQME FYRIILDEAH GIKSRTCNTA RAVCGLRTTR 180
  181 KICLSGTPLQ NRIGELFSLL RFLRADPFAY YYCLQCECKS LHWRFSDRSN CDECGHKPMS 240
  241 HTCYFNAEML KPIQKFGYEG PGKLAFKKVH SLLKHIMLRR TKLERADDLG LPPRVVEVRK 300
  301 DLFNEEEEDV YQSLYMDSKR KFNTYLAEGV VLNNYANIFQ LITRMRQMAD HPDLVLASKR 360
  361 KTVDIENQEN IVCKICDEVA QDAIESRCHH TFCRLCVTEY INAAGDGENV NCPSCFIPLS 420
  421 IDLSAPALED FSEEKFKNAS ILNRIDMNSW RSSTKIEALV EELYLLRKKD RTLKSIVFSQ 480
  481 FTSMLDLIHW RLRKAGFNCV KLDGGMTPKA RAATIEAFSN DINITIFLVS LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1z63A
Description:	Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [871-963]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGGVALNLTE ASQVFMMDPW WNGAVQWQAM DRIHRIGQKR PIKVITLCIE NSIESKIIEL  60
   61 QEKKAQMIHA TIDQDEKALN QLSVEDMQFL FSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1z3iX
Description:	Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits