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View Structure Prediction Details

Protein: CE36182
Organism: Caenorhabditis elegans
Length: 512 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36182.

Description E-value Query
Range
Subject
Range
CE28816 - WBGene00015429 status:Partially_confirmed SW:Q11193 protein_id:AAA82329.2
704.0 [0..16] [481..32]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALRVPLSQ QQLEQLKANK KWGEYVEAQA GQKYEHFTSP YKQSMLTVKE WIMPQGLVIY  60
   61 VRTDDGTYPA RVVNAGPDNI CVRIVKANKS D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPETQISYD QVIKSTEVLK MEPLKFKWIR KKTDNLYSIE AFQNLSGFFN KKVFELLKKG  60
   61 DFMEYQHDDE PWKCTIVEII ENHNGLIFIR NGLFVRCVHM FSPFCHELGW ADKLKETNDE 120
  121 RAAGMTYKIL IKLENDRDQR VIVDRHIFRN NTISPHRFQD LQVLVYLEED HFYLAHVKCK 180
  181 TRKTGLTDSY FFQISRGTEL VRDSLLSDNK MPVQFHLNDA RIFGYRDLER LHFPIDLPDG 240
  241 VQKIEGESNV DAYIRTYCLT DKEKARVPRL NESEKRAMFD RKILSNEIGV HMKHGAMLRD 300
  301 SKFNPTAGSL TPWAGTKCAE VSWFLPSSGR TRNRRADLLA ARVVKYTEHI AHLYVARLDK 360
  361 TIYMHVADPR LHPAGFADGV NLPIEYSDAF AKDADIEIQI SQLEETLDNL ACEQDSTKDQ 420
  421 N

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.971
Match: 1oyxA
Description: CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (SELENO-MET) AT 1.85 ANGSTROM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 1.683835600943 bayes_pls_golite062009
binding 1.59649794705125 bayes_pls_golite062009
transcription repressor activity 1.3096799251989 bayes_pls_golite062009
protein binding 0.921868588668534 bayes_pls_golite062009
nucleic acid binding 0.766012503019696 bayes_pls_golite062009
DNA binding 0.691585542451692 bayes_pls_golite062009
catalytic activity 0.286994103175918 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle