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View Structure Prediction Details

Protein: ret-1
Organism: Caenorhabditis elegans
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ret-1.

Description E-value Query
Range
Subject
Range
gi|49333549, gi|... - gi|72535156|ref|NP_001025138.2| reticulon 1a isoform 1 [Danio rerio], gi|49333549|gb|AAT64113.1| ret...
248.0 [0..2] [194..622]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCQCQKVL DVIYWRDAKK SAIVLSLALL VLFVLAKYPL LTVVTYSLLL ALGAAAGFRV  60
   61 FKKVEAQIKK TDSEHPFSEI LAQDLTLPQE KVHAQADVFV EHATCIANKL KKLVFVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.045757
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #2
Region A:
Residues: [118-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLESIKFGL VLWSLTYIAS WFSGFTLAIL GLLGVFSVPK VYESNQEAID PHLATISGHL  60
   61 KNVQNIIDEK LPFLRSAPVA AEEKKDQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle