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View Structure Prediction Details

Protein: nas-24
Organism: Caenorhabditis elegans
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-24.

Description E-value Query
Range
Subject
Range
gi|72094941, gi|... - gi|72094941|ref|XP_798033.1| PREDICTED: similar to SpAN protein [Strongylocentrotus purpuratus], gi|...
246.0 [0..3] [390..42]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRVVHIIGA AFLLSSYAYC GLSRFNEHDI EGGDSYKRVK REFERLGSKW LGGTINYYYA  60
   61 DNNNSVKEKV KSAIAYIANH TCIKFNEDPT HWQRLKIFTS ELSHCRSTIG APGTRSGSAG 120
  121 ELSMETGWCA NIGSIVHEFS HSLGRYHEHT RPDRDNSLKV TSTDYEARPR PWGMTTMYGP 180
  181 FEHGSIMMYH SSNYGVGKME PYDMEYKNTM GSRRVTFYDM YKINQYYGCG CS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1astA
Description: STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.361128926739778 bayes_pls_golite062009
hydrolase activity 0.29183147920977 bayes_pls_golite062009
peptidase activity 0.23695590197447 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.0341081586881899 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [233-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQLECKNGGY TSPSDCSRCN CPKGFFGKLC NERRQQDSYE LKATYGRWQT QTISFNYKPE  60
   61 PVSDGFYSTF VYITGEANST IEITMEGLEN VICTAGCTWN GVEIKSREDS RITSPVMCCK 120
  121 DEPLYKKVFK SLHNPTIIEL YSKETAPSTA TFKYRFMNDK IVFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 1szbA
Description: Crystal structure of the human MBL-associated protein 19 (MAp19)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle