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View Structure Prediction Details

Protein: CE35806
Organism: Caenorhabditis elegans
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35806.

Description E-value Query
Range
Subject
Range
gi|19353239, gi|... - gi|19353239|gb|AAH24739.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens], gi|13097183|gb|...
143.0 [0..118] [348..44]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPTETQAR ELKIDGGDGN PFTLEREPDS RTVITIAHYR TTDKPEPLVM PLSLQAPGAG  60
   61 RGGRCVEDEE DDADDEVK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEPEDEKEPE DEEEPAEDEE DDEEVEERLE EEPRNVTGGD EASEGDASLG SLRAPSDDEG  60
   61 EQSPWNSDGA EEGRRSPTWS VSWYSDLGSW NRMIMGSSAS SRSLSSISSL STFRSPVCST 120
  121 SGYVSGGAFD LEDDDDEVRM TSPAQSGQLR RQWPDRHFAL VNATIRNSTD QSNLELKKIL 180
  181 KNLG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [263-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEDMECDEYF VMPFKSATQK KLVVFNVTGG QSAALLTARI DKARWMSSFS FDFPSGQFLW  60
   61 PSICMDDLSN CTSWPPLHPT SYHTMRLSKM CI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.154902
Match: 2pl3A
Description: No description for 2pl3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle