YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE35806
Organism: Caenorhabditis elegans
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35806.

Description E-value Query
Range
Subject
Range
gi|19353239, gi|... - gi|19353239|gb|AAH24739.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens], gi|13097183|gb|...
143.0 [0..118] [348..44]

Back

Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPTETQAR ELKIDGGDGN PFTLEREPDS RTVITIAHYR TTDKPEPLVM PLSLQAPGAG  60
   61 RGGRCVEDEE DDADDEVK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEPEDEKEPE DEEEPAEDEE DDEEVEERLE EEPRNVTGGD EASEGDASLG SLRAPSDDEG  60
   61 EQSPWNSDGA EEGRRSPTWS VSWYSDLGSW NRMIMGSSAS SRSLSSISSL STFRSPVCST 120
  121 SGYVSGGAFD LEDDDDEVRM TSPAQSGQLR RQWPDRHFAL VNATIRNSTD QSNLELKKIL 180
  181 KNLG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [263-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEDMECDEYF VMPFKSATQK KLVVFNVTGG QSAALLTARI DKARWMSSFS FDFPSGQFLW  60
   61 PSICMDDLSN CTSWPPLHPT SYHTMRLSKM CI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.154902
Match: 2pl3A
Description: No description for 2pl3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle