| Protein: | nhr-112 |
| Organism: | Caenorhabditis elegans |
| Length: | 308 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-112.
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..2] | [306..242] |
|
Region A: Residues: [1-308] |
1 11 21 31 41 51
| | | | | |
1 MSSLRCIFPQ ILSLEKARLK MIRKCYEAGM TPEKIQLTRD KHLNRTIKLE GPCSSLDTPI 60
61 TSRQTPNLYC VLSNWHELKM TREEMNSGSL NNCNIFELTS FVLRDLELTW RMVSKAFPTV 120
121 EVLEDRDRQA LLRNFVPKLW QIEPILEYRE CAEKFDNLEE EDYENLLVGF YGGTFPEGKE 180
181 MSKSEIVSNF RPYWDYYYTK MILPISSMGL EELEYMAIVW LAFFDNGYSN ISDNCLEMCR 240
241 DIQKVILKEL RNYQIDRNFH ENRFFVALEA LQIIERGEKK FMEEMLVCEM NHIRIHDDFR 300
301 KIIREPKL
|
| Detection Method: |  |
| Confidence: | 40.39794 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
