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View Structure Prediction Details

Protein: CE35508
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35508.

Description E-value Query
Range
Subject
Range
gi|157766905 - gi|157766905|ref|XP_001666932.1| Hypothetical protein CBG08110 [Caenorhabditis briggsae AF16]
gi|39592540, gi|... - gi|39592540|emb|CAE63617.1| Hypothetical protein CBG08110 [Caenorhabditis briggsae], gi|39579246|emb...
349.0 [0..1] [327..1]

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Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPKAPTEG TPLCNVEHIE FESRANDIKA GLIDTFLNLQ RIDTNLYIAR HLLKGRHSYN  60
   61 AVYGGQVVGQ SLAAAAATVE DCFIPHSLHS YFIKTGSVDK PILYMIDRIR DGRSFCTRVV 120
  121 KAVQDGEAIF SCQISFHHKE PDAIKHSSKM PEVTPPEQLL PAREAALEVL RTKEVDEVTA 180
  181 GVIQHFLKEI PDAFERVFDV RPVNPAKYLL KEDTEPMSMI WIRARENLGD DHRLHQCVAA 240
  241 YLTDLSMLTT AVRPHIRNGF IPSMSFSLDH CIWMHENEFR IDDWMLYETI SSKAGGSRAF 300
  301 IEGRLWSRDG RLIISTAQEA LVRAPKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.522879
Match: 1c8uA
Description: Thioesterase II (TesB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
acyl-CoA thioesterase activity 2.60197973503923 bayes_pls_golite062009
CoA hydrolase activity 2.3187640589669 bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity 1.14159464719086 bayes_pls_golite062009
thiolester hydrolase activity 1.14125301545576 bayes_pls_golite062009
catalytic activity 0.74605540351792 bayes_pls_golite062009
binding 0.358549779743531 bayes_pls_golite062009
hydrolase activity 0.093543122203219 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle