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View Structure Prediction Details

Protein: lon-2
Organism: Caenorhabditis elegans
Length: 508 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lon-2.

Description E-value Query
Range
Subject
Range
gi|187027957, gi... - gi|39597952|emb|CAE68644.1| Hypothetical protein CBG14534 [Caenorhabditis briggsae], gi|187027957|em...
gi|157769603 - gi|157769603|ref|XP_001676622.1| Hypothetical protein CBG14534 [Caenorhabditis briggsae AF16]
761.0 [0..1] [390..1]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFRWLILFV LLYRSVLPAE EVVVVDILTN STSLEEPTEE YTCDCNTDDL IQKGNYTLTV  60
   61 EVKNMQVRLV EPFRDAIAFT TGEKKHLLDF IRFVTLREVR STYPLLLNYT DFLNSFDEMI 120
  121 GTFRNILTTE NAISLTGIKY EVSTAVQKFL SAILPDMFLC LSVGKCRTVP LDYHNCMMAS 180
  181 TKHWSVYLGN TPNKMAMTIS EAIYRYRKVE FLLVDMHKQL MNAHNLTLSH ECLQEYVHTL 240
  241 PCNCTMAGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [250-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPCHTSCSNS MEKCFGKFSR EWAAKLHLMR NMTSTKKSFL DEFLSLKKTI FSVIRIFIER  60
   61 KSYVYAEHVF NSCGPLGEMI IHPSKHSVHF QSPGPFVSRG DGAVRELQLS AKTWDRLGRK 120
  121 ICDHSGVVLN PTMCYDGTKV ISIDHDLLPI TK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [402-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVRPRPMMDW IEKKNEKKAN VEGSASNPLW DDEDSEDFDG SGSGMPPVID RNPVKAIIQE  60
   61 DHPKNIDLST NPKGPSVIVT EKEIQPDGST TSSILICVII VAVIKLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle