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View Structure Prediction Details

Protein: CE35351
Organism: Caenorhabditis elegans
Length: 231 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35351.

Description E-value Query
Range		 Subject
Range
gi|76594133 - gi|76594133|gb|ABA54363.1| cytochrome oxidase subunit II [Drosophila acanthoptera]
 326.0 [0..2] [230..1]

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Predicted Domain #1
Region A:
Residues: [1-231] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNFFQGYNL LFQHSLFASY MDWFHSFNCS LLLGVLVFVT LLFGYLIFGT FYFKSKKIEY  60
   61 QFGELLCSIF PTIILLMQMV PSLSLLYYYG LMNLDSNLTV KVTGHQWYWS YEYSDIPGLE 120
  121 FDSYMKSLDQ LSLGEPRLLE VDNRCVIPCD TNIRFCITSA DVIHAWALNS LSVKLDAMSG 180
  181 ILSTFSYSFP MVGVFYGQCS EICGANHSFM PIALEVTLLD NFKSWCFGTM E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.09691
Match: 1occB
Description: Cytochrome c oxidase; Mitochondrial cytochrome c oxidase, subunit II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
heme-copper terminal oxidase activity 8.21657209872475 bayes_pls_golite062009
cytochrome-c oxidase activity 8.13640810981276 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 8.13640810981276 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 8.13640810981276 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 5.24930441108892 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 5.09994678225291 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.92620474394362 bayes_pls_golite062009
cation transmembrane transporter activity 4.62339683995773 bayes_pls_golite062009
ion transmembrane transporter activity 4.41822245638816 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.01548997933537 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 3.84725533004963 bayes_pls_golite062009
substrate-specific transporter activity 3.78910384404517 bayes_pls_golite062009
oxidoreductase activity 2.80323504014983 bayes_pls_golite062009
binding 1.17712143392135 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.50970361410839 bayes_pls_golite062009
kinase activity 0.487072060813572 bayes_pls_golite062009
protein kinase activity 0.436639038220637 bayes_pls_golite062009
catalytic activity 0.363071622766357 bayes_pls_golite062009
protein binding 0.3532683439394 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.325944931150435 bayes_pls_golite062009
receptor binding 0.04439573213493 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle