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View Structure Prediction Details

Protein: CE35221
Organism: Caenorhabditis elegans
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35221.

Description E-value Query
Range
Subject
Range
CE16823 - status:Partially_confirmed UniProt:O76682 protein_id:AAC27095.1
502.0 [0..45] [480..195]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQNAPFLY SQIDPLLLSR TNRPQPRDRW KTIIKITTTF IGVLMVTTPI VFGLSGVAGN  60
   61 TSHFKNISST TGKYPEKNST DFDTSTTTVS EANTTFDTTE SL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLAEEITTQE KLIQLNPNSG HNYVKFTYDI LNNTYSHDNI DGSPVAPYFV DKIERVVDRK  60
   61 NNEAYLHQEF PDDFSNMYWA FSLKNDGKSV EKVVISIPGI EEIVNNRAGV VETCPNFLIN 120
  121 CFNIPVEKSL TIEQQMDKLY ISIMLQKDIK VLKTKLKGVS NVESFKIEVY WKNMT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 2g9gA
Description: No description for 2g9gA was found.

Predicted Domain #3
Region A:
Residues: [278-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPTTTTPG SIATTKSSTT TITETHHQPD ISSTRLTEHQ DIIQLTPKSG QDYAKFTYDV  60
   61 ISNTYSQSNE DGSPVKPYLA SNVEHVVDRR LNVAYIHMKE PINKRIGLIN WEFDFRFPGR 120
  121 SVEKLEIKLT GMDEIVHNGG TANACLHDSF KCTAIPINGS LTIEKPQFNK FFMQIELFKD 180
  181 IKVFKTELND RSSAESISIV VYWS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.0
Match: 2g9fA
Description: No description for 2g9fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle