| Protein: | cup-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 619 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cup-5.
| Description | E-value | Query Range |
Subject Range |
|
|
442.0 | [0..27] | [615..265] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MRLEQIPLES MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR 60
61 RHLQFFFMNP MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR 120
121 HRFLKEWNDD RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYSIR
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [167-619] |
1 11 21 31 41 51
| | | | | |
1 NDSFASFSYD VVSHPSGNLG AQISFESIPP IEVLIDRISN VTVNNNTYNF DIREVKDTKR 60
61 LNLTETEVFQ IGQSDDAVRD ILATRGITFL PEDALKISTV QFKFRLRTIH YSPTAGDQKP 120
121 ECYKISVSIK FDNSRHTGQV HVTLSTVVSY VNVCNGRIIK VSGVGWSFDT LLIGGTDIFV 180
181 LILCILSLIL CCRALIKAHL LQIKTSDYFE NVLKNKITVT DQLDFLNLWY VMIVVNDALI 240
241 IIGTVAKISI EFQDFDNSLF TLTSIFLGMG ALLVYVGVLR YFGFFSQYNI LMLTLKRSAP 300
301 NIMRFMTCAI VLYAGFLIAG WVIIGPYSMK FRTLAESSEA LFSLLNGDDM FATFYTINDS 360
361 NTVIKVFGTV YIYLFVSLFI YVVLSLFIAI IMDAYEVVKD RYSDGLRAIE KRGCLRDFVE 420
421 SNPPPSELGS PTTRSAYAPS NLLNLVFNHS PTR
|
| Detection Method: | |
| Confidence: | 44.154902 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
