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View Structure Prediction Details

Protein: CE34337
Organism: Caenorhabditis elegans
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34337.

Description E-value Query
Range
Subject
Range
CE07369 - status:Partially_confirmed UniProt:Q21407 protein_id:AAB53873.1
470.0 [0..1] [440..1]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHRKLAAFF SCFASRRFSF SLYSLYILFC AGAFPIPRSP SSFFLTISFS SSILPFSSIQ  60
   61 KNYWLVTEKK NQKKKAFGGS EQNEANPPKL LVYMDQDYKA HFKVFCSEVR EWEKIHVVGS 120
  121 LPVLGEWNPR KSFPLTKSTD EENTFHAIVS VPSSIKEFNF RYIRVMYLDP SENNTSEPIM 180
  181 VLSKWETFNN ARTCLIGVES QDGVAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1a47A
Description: CGTASE FROM THERMOANAEROBACTERIUM THERMOSULFURIGENES EM1 IN COMPLEX WITH A MALTOHEXAOSE INHIBITOR
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [207-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNITDQFGSY SGKTQITDGW ILNEKESVVY FRIHGEALKF FAKSYANKEY RLKVEPFDVR  60
   61 YSEIDGDDVV NLPTPSLPCF SNTDLSVLTR EDPIFGDQYF NGSVFRNDQD YLVFRTRTVS 120
  121 LQNLAFRIEF YHGEKRCALS YVLPSSMSGT HGATVSPVIG LSSAPVGHIN VNYMIVKRNK 180
  181 YTDQNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [393-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIDSMKTTFG RYWRKRNRML QIGHRGMGSS YTKFVESAGD PFLNLNSETL AKERTLYFP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.05
Match: 2oogA
Description: No description for 2oogA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle