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View Structure Prediction Details

Protein: CE34334
Organism: Caenorhabditis elegans
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34334.

Description E-value Query
Range
Subject
Range
CE23855 - status:Partially_confirmed UniProt:Q65XY4 protein_id:AAU20843.1
259.0 [0..1] [347..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRIASSSYS QFIASANPSI QTRCISIARI DQKIKRGNSD RRVIHAKKFT KQTDSPASVA  60
   61 GDGFILSKTF LQNAIAHQPP SGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPVGRDGGRD EKKLILHPKE IVEHLNKYVV GQEEAKKYLA VAVYQHYRRV ENNLRVTEQW  60
   61 MLSEAVAAAK ERKKMRKQNP EEEEYYPEYV QKSQRQILKD LEKRQDMILD KSNMILLGAS 120
  121 GTGKTFMTQK LAEVLDVPIV ICDCTTLTQA GYVGDDVDTV IQKLLAEAMG DIEKCQRGIV 180
  181 FLDEFDKIYT SSDPLHTSGN RDVSGKGVQQ ALLKLVEGSL VKVRDPLAPN SKVTIDTSNI 240
  241 LFIASGAFSN IEHIVARRMD KRLVTSLLFH FPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 1um8A
Description: Crystal structure of helicobacter pylori ClpX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle