YRC Public Data Repository - Protein Structure Prediction

Protein:	sid-2
Organism:	Caenorhabditis elegans
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sid-2.

Description	E-value	Query Range	Subject Range
gi\|157775629 - gi\|157775629\|ref\|XP_001665880.1\| hypothetical protein CBG18280 [Caenorhabditis briggsae AF16] gi\|187025293, gi... - gi\|39591798\|emb\|CAE71376.1\| Hypothetical protein CBG18280 [Caenorhabditis briggsae], gi\|187025293\|em...	440.0	[0..14]	[311..13]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFVYFCFA LIALLPISWT MDGILITDVE IHVDVCQISC KASNTASLLI NDAPFTPMCN  60
   61 SAGDQIFFTY NGTAAISDLK NVTFILEVTT DTKNCTFTAN YTGYFTPDPK SKPFQLGFAS 120
  121 ATLNRDMGKV TKTIMEDSGE MVEQDFSNSS AVPTPASTTP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [161-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPQSTVAHLT IAYVHLQYEE TKTVVNKNGG AVAVAVIEGI ALIAILAFLG YRTMVNHKLQ  60
   61 NSTRTNGLYG YDNNNSSRIT VPDAMRMSDI PPPRDPMYAS PPTPLSQPTP ARNTVMTTQE 120
  121 LVVPTANSSA AQPSTTSNGQ FNDPFATLES W