YRC Public Data Repository - Protein Structure Prediction

Protein:	sid-2
Organism:	Caenorhabditis elegans
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sid-2.

Description	E-value	Query Range	Subject Range
gi\|157775629 - gi\|157775629\|ref\|XP_001665880.1\| hypothetical protein CBG18280 [Caenorhabditis briggsae AF16] gi\|187025293, gi... - gi\|39591798\|emb\|CAE71376.1\| Hypothetical protein CBG18280 [Caenorhabditis briggsae], gi\|187025293\|em...	440.0	[0..14]	[311..13]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFVYFCFA LIALLPISWT MDGILITDVE IHVDVCQISC KASNTASLLI NDAPFTPMCN  60
   61 SAGDQIFFTY NGTAAISDLK NVTFILEVTT DTKNCTFTAN YTGYFTPDPK SKPFQLGFAS 120
  121 ATLNRDMGKV TKTIMEDSGE MVEQDFSNSS AVPTPASTTP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [161-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPQSTVAHLT IAYVHLQYEE TKTVVNKNGG AVAVAVIEGI ALIAILAFLG YRTMVNHKLQ  60
   61 NSTRTNGLYG YDNNNSSRIT VPDAMRMSDI PPPRDPMYAS PPTPLSQPTP ARNTVMTTQE 120
  121 LVVPTANSSA AQPSTTSNGQ FNDPFATLES W