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View Structure Prediction Details

Protein: fbxa-1
Organism: Caenorhabditis elegans
Length: 766 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-1.

Description E-value Query
Range
Subject
Range
gi|187026945, gi... - gi|39588837|emb|CAE69467.1| Hypothetical protein CBG15663 [Caenorhabditis briggsae], gi|187026945|em...
gi|157772627 - gi|157772627|ref|XP_001664378.1| hypothetical protein CBG15663 [Caenorhabditis briggsae AF16]
360.0 [0..1] [766..1]

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Predicted Domain #1
Region A:
Residues: [1-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQTSEPMAR TPIQFGENMR ITVAASQGGR RYMEDRCVIH TERINNGLLD WTFVGVFDGH  60
   61 GGEHASEYVR RHLLMNITKN QKFESNSDED ILEAIRQGFL MTHEQMRHVY DEWPYTASGY 120
  121 PSTAGTTVSC VFIRNGKLYT GHVGDSAIFL GTVENGELHS RPLTTDHKPE SVHEQLRIAK 180
  181 AGGETAVKSG VTRVVWKRPQ KMSQFMMMTS NSNEQKHHQN PQIMENIPFL SVARSLGDLW 240
  241 SYNEKTNMFI VSPEPDLGVH RLTGNDFCLV LASDGMTNVM TGDQAISIVF KEEEMVEIHE 300
  301 EINRNHSRCV LRSALQKWRS LRADNVTIAT VIFDIEPIKY TDAEMLMKVG KYVNASQVLT 360
  361 DRPDAMLKVS KNENILLSTQ RTPIIYNGSK DVNFCRVTYK GPGFRTHEDE LLEERRNLMS 420
  421 KFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.221849
Match: 1a6qA
Description: CRYSTAL STRUCTURE OF THE PROTEIN SERINE/THREONINE PHOSPHATASE 2C AT 2 A RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoprotein phosphatase activity 7.29765002420868 bayes_pls_golite062009
phosphatase activity 6.84540130415879 bayes_pls_golite062009
phosphoric ester hydrolase activity 6.63839066304808 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 5.76293366458633 bayes_pls_golite062009
protein serine/threonine phosphatase activity 5.66354576593165 bayes_pls_golite062009
hydrolase activity 4.10826723952347 bayes_pls_golite062009
binding 1.74689317666387 bayes_pls_golite062009
catalytic activity 1.53401212718168 bayes_pls_golite062009
protein binding 0.425331902048676 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [424-568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVDGGAAIAI AGGPPVDARR GDTTGKDENN VKYDVNGEED DIINDITTEE EASQEIDLSL  60
   61 RLVQRSTAVT IIESPNRPPR PHAPRPVFID DSIIEEENDG NLDEKSLIGV QITPSRTSPG 120
  121 HCTVRRVKAE AVRKLRTPKM STMDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [569-766]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSSTPPDR RITRSASKGL KTPPTPEPPR GIIGVNPNLT ADAVLLLTPR RRRSTRIQNS  60
   61 CASAAAPGAA SLSTEKLTQS SRKRARTCAV GAASGVTPVV ASLTLQDHQL LRPHTHAPPP 120
  121 TPSRSAPSSP SSKKCEISSS LKTSKSAKAS SLSKLDDGII RVSEIADEED DDDVTMMRGP 180
  181 PSKMRRFFGY MKKMVWGK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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