YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: lst-3
Organism: Caenorhabditis elegans
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lst-3.

Description E-value Query
Range
Subject
Range
lst-3 - status:Partially_confirmed UniProt:Q9XTH8 protein_id:CAB05201.1
421.0 [0..1] [506..1]

Back

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGGGKPP GQWHRPAAPG GAPQLSGFSA VNFGGVPMVG MGVPMGMVNQ AAFSSQGVLG  60
   61 MQGIMGAVPQ QSLPQQQPNF QQQNSLQQGT N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNSGAKNQ RTFVGVVTKM LDTYGFVDDD VFFQHSVIRG SHPRVGDKVM VEANYNPSMP  60
   61 FKWNAYRIQL LNAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [166-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQQEPARQAP QQQQMHQPQR GGQESQRWGA APASGTSDRA DRNGGARGND SPLHRSSAAR  60
   61 RHSPPPRRAS PPRRTSSPKR DARPAREIRD SREPREVRRS PPPRRAASPR KASSPSAPAK 120
  121 NDRKRERSPS GSVAPSVRRE SASPPRRRAR IIPRYECRAQ KPALLSPIVS GSVLRHRYSK 180
  181 LYLPSDYVDL SF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [358-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWVRSFQLDL SLDLSNPIQF HVFNKDVDFI GEEEIQDLDP EDADHRHQVK VLLLSHAGKS  60
   61 EVVKKAFCLM ADGTTDDHQE PQSLLKNLHF LVGARGKETM GIGGSWSPSQ DGADPNSATT 120
  121 MIRTAVRTTK SLTGIDLSSV SQWRKKAMLL PT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle