| Protein: | nhr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 440 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..4] | [439..383] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MNGTLADQLQ SHLANYGQPM VNSQRNEDPS MYMNGSAASV SHTNGSSSMG NDQKFPSYKR 60
61 MAQRRKVPEG ELCAVCSDLA TGYHYGVASC NGCKTFFRRT IVSEQTFICQ YNGNCDVNKN 120
121 IRCACRHCRF NKCLLVGMDA KAIQNDRDRI GPTKKIKMSS GSDDEQATTP HRLQDQEIID 180
181 Q
|
| Detection Method: |  |
| Confidence: | 24.30103 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [182-440] |
1 11 21 31 41 51
| | | | | |
1 LTQVEGLCQE LRRCIIPEVT GVTHALTSPC LLFETTDLKV DVSLTNTIFK ELFPASMNDI 60
61 RMWNIREMRI CIEWAKTFDV YQRLNLFDQF ALVRNFAFAF NLLNRVFYSP DHGPDKIVFQ 120
121 NGAFIMRQPQ QQVQLSGCRP IYTRQMDEIM IPFRKLQLSV AEFATFKAAL FFNPDALDLS 180
181 PQAKQEVFEE RNKYLGGLFT CITQKIGIPT GVQKYGSLLM MTASIQNILA QNEENMQVME 240
241 LFKNWEVDPF VKELCMKRA
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1xiuA |
| Description: | Crystal structure of the agonist-bound ligand-binding domain of Biomphalaria glabrata RXR |
Matching Structure (courtesy of the PDB): |
|
