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View Structure Prediction Details

Protein: CE33737
Organism: Caenorhabditis elegans
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE33737.

Description E-value Query
Range
Subject
Range
gi|119193086, gi... - gi|90305935|gb|EAS35566.1| hypothetical protein CIMG_00920 [Coccidioides immitis RS], gi|119193086|r...
173.0 [0..36] [384..10]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQPHVAVE SYLVGNDSIM ASVASSSQVI LPVAADSSSI GSVNTMDEVH YASTDFYIGL  60
   61 GLAVSSSLFI GSSFIIKKKA LLKLASGDTS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRASEGGYGY LREWMWWMGV ITMGIGEACN FAAYAFAPAS LVTPLGALSV IVTAILSSRM  60
   61 LNERLNLLGS IGCALCLLGS TVIVIHSPKE EEVG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.03
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [185-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMADLALKMK DAGFLIYVIL IILATGFIVV YVAPRYGHSN ILVYISVCSL IGSLSVLSET  60
   61 LAGNQQFTNW LTYFWLASVA MCVSVQLIYL NKALDIFNTS MVTPIYYVFF TTFVILASSI 120
  121 LYKEWSCLGA SDVIGNFVGF LTTIIGIFQM QLFRDVNISL YQVQRLVSRP SATLANADFS 180
  181 SSSTNLVDDY CMRQSNSNRR MVYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle