| Protein: | nhr-109 |
| Organism: | Caenorhabditis elegans |
| Length: | 304 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-109.
| Description | E-value | Query Range |
Subject Range |
|
|
217.0 | [0..2] | [301..274] |
|
Region A: Residues: [1-304] |
1 11 21 31 41 51
| | | | | |
1 MCRACRLTKC IEVGMNPVGV RQKPGSFRKS KELISPSSSN HDEFSRMPIL SKMKLNYENM 60
61 RNARKALHNE VGENVFEEKI PKEINYKESV QQGMKDYTLM PEWVSSCFDE FRTLSADQKN 120
121 ILFRNSYIPF FMMETAFLSH INNMPDSVIF PSGDYCDMKN LERYYNSTNF EKKISTEDIE 180
181 NLFKPFYDNY KRSLLLPMMN LQVDIYEFLT LFTLLHWDTG LVEITDECLE IGTKVKAEVF 240
241 KELDFYLTNV KKVAEPSVRI GTIVNLLPAV HKSVRRIQDD MEMTKVFNIF SAPNEFFDLV 300
301 TGNF
|
| Detection Method: |  |
| Confidence: | 43.69897 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
