| Protein: | syd-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 721 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for syd-1.
| Description | E-value | Query Range |
Subject Range |
|
|
413.0 | [0..1] | [721..267] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MRNATTSSTL RTHASTSSPR NHFAPRLVNG HSHSIGVPSA STTSHDHQYQ RFASEPSDSV 60
61 SRTARVPPPR LASATVRRTE SFNSAPGVST SAPMYTLPRS STAVPPPDIL GSIPYSARDP 120
121 LMRSSADLPY DPMTGRLSSS VPTDPLLSRS LCSPILPRTL RQANDSNKSN SLPRRRIMTG 180
181 GRNVKWRNDV VSTSDLCGEE SDGAISAPEY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [211-721] |
1 11 21 31 41 51
| | | | | |
1 SSPPFSRLTQ QQQFRLSNGS PGRTVNDIFS AAEYRNWAGP YDPRGMYGPF PPGQRATRWS 60
61 HTYGEQRAPR TSSLPGRTVL AQSLVGSPVL PRHPPPIVQD RPSAVFDRYH VSPLMNRRAP 120
121 LRAAGPGINV DRLSVSSLTG ILYVHIVEGR GLKIPEKQKG LTEEMYCVLE VDEQHRARTG 180
181 VSTIEQKFKW RETFHIDVVN ATVSNFFVYS WHPQFRHKLC HKGSLKLLEA FVVDQLNDDR 240
241 VFALNLEPRG QLIVRIGFHD LQAVFRRTVN PRLNGVFGIS LSRLVQRERR DTPIVLTRLI 300
301 QEIEKRGVDY SGLYVLCGSV EKKKMLRAEL ESNPLGTELA AESIPDTNVI ACLIKDFLRE 360
361 LPEPLISPQI HGMLLEAASV ALPNDVQTNR HLVLKIIDCL QLSAKNCLLL VLDHLSTVLC 420
421 SSPHNGLTPT RLSLIFAPLL FFCLDTFSPY TISPTSKMAA VRTLDINQAS SSLQMILSIW 480
481 PSRVNSESGS DSPATTCQKG GVIAYVSESQ C
|
| Detection Method: | |
| Confidence: | 69.221849 |
| Match: | 1xa6A |
| Description: | Crystal Structure of the Human Beta2-Chimaerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| enzyme activator activity | 0.53004209819211 | bayes_pls_golite062009 |
| GTPase activator activity | 0.528693496432149 | bayes_pls_golite062009 |
| binding | 0.0980674097362609 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 0.0454578418356197 | bayes_pls_golite062009 |
