YRC Public Data Repository - Protein Structure Prediction

Protein:	lin-32
Organism:	Caenorhabditis elegans
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-32.

Description	E-value	Query Range	Subject Range
gi\|2801465, gi\|9... - gi\|9629901\|ref\|NP_045935.1\| p110 [Avian myelocytomatosis virus], gi\|61609\|emb\|CAA24499.1\| p96 polypr... gi\|625263 - gi\|625263\|pir\|\|FOFV29 gag-myc polyprotein - avian myelocytomatosis virus MC29 (provirus)	107.0	[0..11]	[140..726]
gi\|157423113, gi... - gi\|62857619\|ref\|NP_001017160.1\| myogenic factor 6 [Xenopus (Silurana) tropicalis], gi\|157423113\|gb\|A...	105.0	[0..8]	[137..27]
gi\|27413425 - gi\|27413425\|gb\|AAO11649.1\| muscle regulatory factor 4b [Xenopus laevis]	105.0	[0..8]	[139..27]
MYF6_BOVIN - Myogenic factor 6 OS=Bos taurus GN=MYF6 PE=2 SV=1	104.0	[0..5]	[139..25]
gi\|66735448 - gi\|66735448\|gb\|AAY53906.1\| bHLH muscle transcription factor MRF4 [Sternopygus macrurus]	104.0	[0..8]	[137..31]
gi\|115932185, gi... - gi\|115932185\|ref\|XP_001178452.1\| PREDICTED: similar to Transcription factor SUM-1 (Sea urchin myogen...	104.0	[0..1]	[142..26]
MYF6 - myogenic factor 6 (herculin) CCDS9019.1_1 - null gi\|109097928 - gi\|109097928\|ref\|XP_001086944.1\| PREDICTED: myogenic factor 6 (herculin) [Macaca mulatta] gi\|124000135, gi... - gi\|124000135\|gb\|ABM87576.1\| myogenic factor 6 (herculin) [synthetic construct], gi\|123993145\|gb\|ABM8... gi\|114646062 - gi\|114646062\|ref\|XP_001164135.1\| PREDICTED: myogenic factor 6 (herculin) [Pan troglodytes]	102.0	[0..5]	[139..25]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWEQYQMYV PQCHPSFMYQ GSIQSTMTTP LQSPNFSLDS PNYPDSLSNG GGKDDKKKCR  60
   61 RYKTPSPQLL RMRRSAANER ERRRMNTLNV AYDELREVLP EIDSGKKLSK FETLQMAQKY 120
  121 IECLSQILKQ DSKNENLKSK SG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	1nkpA
Description:	Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits