| Protein: | nhr-88 |
| Organism: | Caenorhabditis elegans |
| Length: | 593 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-88.
| Description | E-value | Query Range |
Subject Range |
|
|
403.0 | [0..1] | [593..6] |
|
Region A: Residues: [1-108] |
1 11 21 31 41 51
| | | | | |
1 MFAPSTVYTY GHHGSGTDED DGQQVMPGMD NGDGQCMVCG DRSAGKHYGV MACYGCKGFF 60
61 RRTIRSQQTY TCRFTQKCAI DKDQRNACRY CRFQRCLTVG MEPEAIRP
|
| Detection Method: |  |
| Confidence: | 30.522879 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [109-422] |
1 11 21 31 41 51
| | | | | |
1 DRDVIGKQKN PRKKKMKSDT NSGSIDASLP SPNGCDSPVS NNEDVILSFL LDVEDQATCG 60
61 NNHITMPIGI SMMMKNDPDF DVSTLFHSQY VRNQESFPIT YAVGRTASVE QLIAALRRYV 120
121 LSAVHWIDAL FNLAHLTEIH DKTTLLKSVI GPFTIFNIAA RTAQISDGDL ICLCNKSTIN 180
181 RQPARHLLDT NLVGNNFVGR VIDDLVFPTK KLALTNPEIT ILSALIILDP DARGLSQETS 240
241 QALLGIRDRV QNALFNLIRD NSNNMTSVTS RFGNLLLLFP PLAKLSSLIG ENVQLAKMFG 300
301 IPIDSLLVEL YVDA
|
| Detection Method: | |
| Confidence: | 32.522879 |
| Match: | 1z5xE |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [423-593] |
1 11 21 31 41 51
| | | | | |
1 DSPELISQGS HARERSDVST QTASLEGASA SMTPDVTSSE FVKMEQNESP SSSEEPMCIG 60
61 APATSSANAV ATNLAADLLG LLPNFDATGL DLASAAAAAA TSVNYSHFYG FGNLGGSLDD 120
121 SSSSGTGSVG SFAPHSAPPI SNNVNPFAVH GFFDNSAPNT GVVHNQPFRF V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
