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View Structure Prediction Details

Protein: inx-3
Organism: Caenorhabditis elegans
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-3.

Description E-value Query
Range
Subject
Range
gi|7499691 - gi|7499691|pir||T16141 hypothetical protein F22F4.2 - Caenorhabditis elegans
475.0 [0..1] [420..13]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVPFIDRW LSETFKPKTF DDAVDRLSYV TTATLLAFFS IMVSCKQYVG SAIQCWMPME  60
   61 FKGGWEQYAE DYCFIQNTFF IPERSEIPGD VEDRQKAEIG YYQWVPIVLA IQAFMFYLPS 120
  121 WIWSSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKQCGLDFPS VISEAEALRS QDSETRTKGV NKLVDFIGDI LDTRSKNEYG RFYCYRFGKG  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [187-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSMTSMLYI CIKLMYLANV FVQFIILNKF LGNETFLWGF HTFADLYAGR EWQDSGVFPR  60
   61 VTLCDFSVRK LANVHRYTVQ CVLMINMFNE KIYLFIWFWF VFVLITTFIN TLCTIYRLSF 120
  121 DSSRHNYIRS LLSGPVNNFK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [327-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKAMIASFA NNGLKQDGVL LMRFIDDHAG AMVTKEICEE LFKKHGENLQ HNRDFHHGHS  60
   61 TKSTSPGLEE GHHEHLYTPE KMKLMAPDYP IKHA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle