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View Structure Prediction Details

Protein: inx-3
Organism: Caenorhabditis elegans
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-3.

Description E-value Query
Range
Subject
Range
gi|7499691 - gi|7499691|pir||T16141 hypothetical protein F22F4.2 - Caenorhabditis elegans
475.0 [0..1] [420..13]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVPFIDRW LSETFKPKTF DDAVDRLSYV TTATLLAFFS IMVSCKQYVG SAIQCWMPME  60
   61 FKGGWEQYAE DYCFIQNTFF IPERSEIPGD VEDRQKAEIG YYQWVPIVLA IQAFMFYLPS 120
  121 WIWSSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKQCGLDFPS VISEAEALRS QDSETRTKGV NKLVDFIGDI LDTRSKNEYG RFYCYRFGKG  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [187-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSMTSMLYI CIKLMYLANV FVQFIILNKF LGNETFLWGF HTFADLYAGR EWQDSGVFPR  60
   61 VTLCDFSVRK LANVHRYTVQ CVLMINMFNE KIYLFIWFWF VFVLITTFIN TLCTIYRLSF 120
  121 DSSRHNYIRS LLSGPVNNFK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [327-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKAMIASFA NNGLKQDGVL LMRFIDDHAG AMVTKEICEE LFKKHGENLQ HNRDFHHGHS  60
   61 TKSTSPGLEE GHHEHLYTPE KMKLMAPDYP IKHA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle