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View Structure Prediction Details

Protein: CE32998
Organism: Caenorhabditis elegans
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32998.

Description E-value Query
Range
Subject
Range
gi|220942562 - gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
mrn-PA - The gene marionette is referred to in FlyBase by the symbol Dmel\mrn (CG7764, FBgn0261109). It is a ...
615.0 [0..7] [469..20]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDQPAAAP HLTGTSSKNS CLFLDFLITI PPKTRQRLLQ KPSCAFFIYR MLPPIAQQTT  60
   61 IQLIWKGSFP TASDVEETKE IEDQVKLLKD LGLVHRQTTD GKLNIDTDYK RSYMYAAML

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAAQISSLVL EPNEGNRRGK DVEKKAVERW DCILRYLALP SEENTQAVSE TTRNLFKKAN  60
   61 FTSGGDTQIE ITTFGFQFLL LSPVKQMWTY VIEYLKLEMS QGQDIVEVIE PLIQIVLLAN 120
  121 RGFKAERECY QIDANWTEPQ NELLNHLREL GVIFIRKRKD GVFFLTQLLT H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [291-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LATNETIDDV SAEKVSNGKV IVETNFRVYA YTSSLLQLAI IALFTEMTYR FQDMSVGMIT  60
   61 RESVRGALQH GITAAQIISF LRANAHPQCI ATSGPVNCLP ITVADQIRLW EDERRRMNLK 120
  121 DAYIYSHFES EDEFHGVCEY ARQQNILLWS DNQQKLVIVN EDGHELVRQW YKREKSKTGA 180
  181 GGEASSSTSS A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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