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View Structure Prediction Details

Protein: CE32998
Organism: Caenorhabditis elegans
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32998.

Description E-value Query
Range
Subject
Range
gi|220942562 - gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
mrn-PA - The gene marionette is referred to in FlyBase by the symbol Dmel\mrn (CG7764, FBgn0261109). It is a ...
615.0 [0..7] [469..20]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDQPAAAP HLTGTSSKNS CLFLDFLITI PPKTRQRLLQ KPSCAFFIYR MLPPIAQQTT  60
   61 IQLIWKGSFP TASDVEETKE IEDQVKLLKD LGLVHRQTTD GKLNIDTDYK RSYMYAAML

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAAQISSLVL EPNEGNRRGK DVEKKAVERW DCILRYLALP SEENTQAVSE TTRNLFKKAN  60
   61 FTSGGDTQIE ITTFGFQFLL LSPVKQMWTY VIEYLKLEMS QGQDIVEVIE PLIQIVLLAN 120
  121 RGFKAERECY QIDANWTEPQ NELLNHLREL GVIFIRKRKD GVFFLTQLLT H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [291-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LATNETIDDV SAEKVSNGKV IVETNFRVYA YTSSLLQLAI IALFTEMTYR FQDMSVGMIT  60
   61 RESVRGALQH GITAAQIISF LRANAHPQCI ATSGPVNCLP ITVADQIRLW EDERRRMNLK 120
  121 DAYIYSHFES EDEFHGVCEY ARQQNILLWS DNQQKLVIVN EDGHELVRQW YKREKSKTGA 180
  181 GGEASSSTSS A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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