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View Structure Prediction Details

Protein: vab-9
Organism: Caenorhabditis elegans
Length: 211 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vab-9.

Description E-value Query
Range
Subject
Range
gi|73976701 - gi|73976701|ref|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris]
171.0 [0..12] [211..91]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVQRTTIE AVSAVRPLKI ISLICLVIAV GLMIVALCST SWLKTGSFRT GLFKECTSTN  60
   61 EPTHAAPFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPAPGSCHK PSRNSGFLTA AAVLLIVALF LTALSTIFNI VGLSKSDVRG KYRWYRIATM  60
   61 ISGFSVLLEL TALIMFPAAF YVKISDYGSR RNWEVDWSYG IAWGATLFTI GATIMLICDK 120
  121 EHEEVYYKEK TIYNPPPELS DR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle