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View Structure Prediction Details

Protein: pme-3
Organism: Caenorhabditis elegans
Length: 764 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pme-3.

Description E-value Query
Range
Subject
Range
pme-3 - poly(ADP)ribose glycohydrolases status:Confirmed UniProt:Q867X0 protein_id:CAD89735.1
658.0 [0..1] [764..1]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKFIELGD PVTQDEKDYE DYVGVGFAHQ VPTMKRRKLT EHGNTTESKE DPEEPKSRDV  60
   61 FVSSQSSDES QEDSAENPEI AKEVSENCEN LTETLKISNI ESLDNVTERS EHTLDNHKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPMEEDVNN KSNIDVAINS DEDDELVLEE NNKEMRDGEQ VQQLSQDLFA DDQELIEYPG  60
   61 IMKDTTTQLD ITDSEVETAQ KMEMIEETEA DSTFVGEDSK ATKTVRTSSS SFLSTVSTCE 120
  121 APAKGRARMY QKELEKHVIA FTEGNLTLQP DLNKVDPDRN YRYCTIPNFP ASQGKLREDN 180
  181 R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [301-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGPKIVLPQR WREFDSRGRR RDSYFYFKRK LDGYLKCYKT TGYFMFVGLL HNMWEFDPDI  60
   61 TYKLPALEMY YKEMSELVGR EEVLEKFARV ARIAKTAEDI LPERIYRLVG DVESATLSHK 120
  121 QCAALVARMF FARPD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [436-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPFSFCRILS SDKSICVEKL KFLFTYFDKM SMDPPDGAVS FRLTKMDKDT FNEEWKDKKL  60
   61 RSLPEVEFFD EMLIEDTALC TQVDFANEHL GGGVLNHGSV QEEIRFLMCP EMMVGMLLCE 120
  121 KMKQLEAISI V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [567-654]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAYVFSSYTG YGHTLKWAEL QPNHSRQNTN EFRDRFGRLR VETIAIDAIL FKGSKLDCQT  60
   61 EQLNKANIIR EMKKASIGFM SQGPKFTN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [655-764]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPIVTGWWGC GAFNGDKPLK FIIQVIAAGV ADRPLHFCSF GEPELAAKCK KIIERMKQKD  60
   61 VTLGMLFSMI NNTGLPHKHF EFYVFDRIST YLSSSEDVES SKSSPSVSRA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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