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View Structure Prediction Details

Protein: CE32856
Organism: Caenorhabditis elegans
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32856.

Description E-value Query
Range
Subject
Range
gi|41205692 - gi|41205692|gb|AAR99612.1| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]
323.0 [0..38] [357..3]

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Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLRVFGRI HNARRNYSPL PVDPLLRFKT ISQTQKAPRV LITGSLGQLG RGLNSVYKYM  60
   61 YGSECVVMSD IVRLPANATD VSDYNYLDIL NQGSIEEIVV NKNIDTIVHF SALLSAVGET 120
  121 NVPLALQVNC RGVENILQVA AKHKLKVFIP STIGAFGPTT PRENTPDLTV QCPTTIYGVS 180
  181 KVYAERLGEY FNHRFGVDFR SMRFPGIISA TKPGGGTTDY AIQIFYDALQ KGKHTCYLRP 240
  241 DTRLPMMYDT DCMASVIQLL AADSQSLKRR TYNVTGFSFT PEEIADAIRR VMPGFEIDYD 300
  301 ICPTRQSIAD SWPMSLDDSE ARKDWGWNPE YGLDETVQVM FALLRREEDK PTKIVSTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.221849
Match: 1bxkA
Description: dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.03099072397093 bayes_pls_golite062009
oxidoreductase activity 0.442294542097958 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle