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View Structure Prediction Details

Protein: dcp-66
Organism: Caenorhabditis elegans
Length: 684 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dcp-66.

Description E-value Query
Range
Subject
Range
dcp-66 - status:Partially_confirmed UniProt:O17910 protein_id:CAB07229.1
346.0 [0..1] [684..1]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQQVPSS PMNGIPEKNG NGLSIEESAS TAVAALAHIQ NGAVLFHGTP TKDLNGASTS  60
   61 IDTDDLQLSP SDLRRRSTRA SALKAQEKIK LKDDIVQGPQ KRANDDDDME DEELGDEINE 120
  121 QSAPKKRRLE NGKEFDQTCF RFGLRANNEG EVYAMTDESE NSSIHESEME VVRYHYEKMK 180
  181 NKEPDEEQLR ERLNMRREAE NQLREEEAKL LVLRKMKDSQ T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [222-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAITKLAAET KAADLAEATS AAYKPAVATN GKSVTNGKNS MIESNNKTMN GLKNLSIPQQ  60
   61 LELLQKLSSQ SPAAKQAYIM AKKNPAQTTQ LFQQLITINN QNLQKQKELS AAETNASASA 120
  121 SPAVQQSQQA QQPQQAQITQ SKLLNQQTPA QRIQAARLAF RAQADKQLTT IPTQKSQPHD 180
  181 ITFLPNPNAS AFLALHGLDL VVQHVLKDRS NETPYAGPSY ECEECK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.045757
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [448-684]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TECAHTWKAI GSTQDDLHLY CENCVRSAQK RKNRTDQTAL LKRAFQKITA QEKLLQEFEK  60
   61 KIAEGQLEQY AEAKAAAPAT SQTIPTSSTA TVSSIPLVPR LPQIPSSTGS STPTQAVKTS 120
  121 TPIHSTPKSS SSSAKKTAAQ LQQQSMQGMN QLFSTAMLRN NPQMQQMLQM YQALAMGGGA 180
  181 ANMANNQMAM LFQAQAMQAA QAQVARAQAA KAQAAQAQAA QLKPRHRQIE RRINNQC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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