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View Structure Prediction Details

Protein: dcp-66
Organism: Caenorhabditis elegans
Length: 684 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dcp-66.

Description E-value Query
Range
Subject
Range
dcp-66 - status:Partially_confirmed UniProt:O17910 protein_id:CAB07229.1
346.0 [0..1] [684..1]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQQVPSS PMNGIPEKNG NGLSIEESAS TAVAALAHIQ NGAVLFHGTP TKDLNGASTS  60
   61 IDTDDLQLSP SDLRRRSTRA SALKAQEKIK LKDDIVQGPQ KRANDDDDME DEELGDEINE 120
  121 QSAPKKRRLE NGKEFDQTCF RFGLRANNEG EVYAMTDESE NSSIHESEME VVRYHYEKMK 180
  181 NKEPDEEQLR ERLNMRREAE NQLREEEAKL LVLRKMKDSQ T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [222-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAITKLAAET KAADLAEATS AAYKPAVATN GKSVTNGKNS MIESNNKTMN GLKNLSIPQQ  60
   61 LELLQKLSSQ SPAAKQAYIM AKKNPAQTTQ LFQQLITINN QNLQKQKELS AAETNASASA 120
  121 SPAVQQSQQA QQPQQAQITQ SKLLNQQTPA QRIQAARLAF RAQADKQLTT IPTQKSQPHD 180
  181 ITFLPNPNAS AFLALHGLDL VVQHVLKDRS NETPYAGPSY ECEECK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.045757
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [448-684]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TECAHTWKAI GSTQDDLHLY CENCVRSAQK RKNRTDQTAL LKRAFQKITA QEKLLQEFEK  60
   61 KIAEGQLEQY AEAKAAAPAT SQTIPTSSTA TVSSIPLVPR LPQIPSSTGS STPTQAVKTS 120
  121 TPIHSTPKSS SSSAKKTAAQ LQQQSMQGMN QLFSTAMLRN NPQMQQMLQM YQALAMGGGA 180
  181 ANMANNQMAM LFQAQAMQAA QAQVARAQAA KAQAAQAQAA QLKPRHRQIE RRINNQC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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