| Protein: | ccr-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 597 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ccr-4.
| Description | E-value | Query Range |
Subject Range |
|
|
424.0 | [0..45] | [597..54] |
|
Region A: Residues: [1-504] |
1 11 21 31 41 51
| | | | | |
1 MSSGDMTSEY KDKQGGGAGQ PLTKSENNDG KKTLTNGMSR VHRVLTEDEI ASGRSTRWTE 60
61 LEIHGRVKNL SPSLWQLTHL SALFLNNNGL TRLPPEIAQL TNLTMLDISN NKLRSLPTEL 120
121 GDMISLCHLY LNNNQLRVLP YELGKLFRIQ TLGLQGNPLS PEISKIYHET NGAQKILQFL 180
181 LDHLTINTHP PPERNWVMIR HADPERPIAT FTVLCYNVLC DKYATVNQYS YCPSWALNWE 240
241 YRKGLIIKEI RTYEADVITL QEVETEQFRT LFQPELKQLG YAGIFEAKSR AKTMGEEERK 300
301 YVDGCAIFWK VDKFDMDKQY LFEFSSVAMK KASTSENMLN RVMPRDNIGL CAVLKIKESV 360
361 YANKFLGRMQ IPMNDNVVGN PLVVATAHIH WDPEFCDVKL VQSMMLTHEV SRVLEEVSKK 420
421 YQITQQQVPV LICGDFNSLP DSGVFEYLSK GQITRRHMDL KSFRDDSCLE KFTNSTDKNV 480
481 ISHPLRLDSA CDINSIPFTN YTLD
|
| Detection Method: |  |
| Confidence: | 18.221849 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [505-597] |
1 11 21 31 41 51
| | | | | |
1 FKGMIDYIFA TPQSLARLGI LGPFDPQWVQ SNKILGFPHP HVASDHIPIM AQYAIIPTTH 60
61 QRQQPLQQAG PAAGVIGGGF PSTPSGAQPF LRC
|
| Detection Method: | |
| Confidence: | 1.35 |
| Match: | 2ddrA |
| Description: | No description for 2ddrA was found. |
