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View Structure Prediction Details

Protein: ccr-4
Organism: Caenorhabditis elegans
Length: 606 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ccr-4.

Description E-value Query
Range
Subject
Range
ccr-4 - status:Confirmed UniProt:Q8I4B4 protein_id:CAD45610.1
449.0 [0..36] [606..27]

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Predicted Domain #1
Region A:
Residues: [1-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVLKSDVM SSGDMTSEYK DKQGGGAGQP LTKSENNDGK KTLTNGMSRV HRVLTEDEIA  60
   61 SGRSTRWTEL EIHGRVKNLS PSLWQLTHLS ALFLNNNGLT RLPPEIAQLT NLTMLDISNN 120
  121 KLRSLPTELG DMISLCHLYL NNNQLRVLPY ELGKLFRIQT LGLQGNPLSP EISKIYHETN 180
  181 GAQKILQFLL DHLTINTHPP PERNWVMIRH ADPERPIATF TVLCYNVLCD KYATVNQYSY 240
  241 CPSWALNWEY RKGLIIKEIR TYEADVITLQ EVETEQFRTL FQPELKQLGY AGIFEAKSRA 300
  301 KTMGEEERKY VDGCAIFWKV DKFDMDKQYL FEFSSVAMKK ASTSENMLNR VMPRDNIGLC 360
  361 AVLKIKESVY ANKFLGRMQI PMNDNVVGNP LVVATAHIHW DPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2z64A
Description: No description for 2z64A was found.

Predicted Domain #2
Region A:
Residues: [404-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FCDVKLVQSM MLTHEVSRVL EEVSKKYQIT QQQVPVLICG DFNSLPDSGV FEYLSKGQIT  60
   61 RRHMDLKSFR DDSCLEKFTN STDKNVISHP LRLDSACDIN SIPFTNYTLD FKGMIDYIFA 120
  121 TPQSLARLGI LGPFDPQWVQ SNKILGFPHP HVASDHIPIM AQYAIIPTTH QRQQPLQQAG 180
  181 PAAGVIGGGF PSTPSGAQPF LRC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.97
Match: 2ddrA
Description: No description for 2ddrA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle