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View Structure Prediction Details

Protein: deb-1
Organism: Caenorhabditis elegans
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for deb-1.

Description E-value Query
Range
Subject
Range
deb-1 - status:Confirmed UniProt:P19826 protein_id:AAM81104.1
359.0 [0..3] [369..644]

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Predicted Domain #1
Region A:
Residues: [1-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPINRYSSSV SDHYDSSDEY DNYSEQNYEY VYKTRLVPFN PQVLITIPPM VNNAKQIAQN  60
   61 PHDQYAAQNW RGTNDHLLNS VRAVGDAITG VPMSNGRHSS YQESISRASP YNPPPPSSQV 120
  121 IRSVNASPPT APIIHNKMII REDIPAPPRP PPPVELSPPP RPPPPPEYDE EEETRAFWER 180
  181 YPLPQASHQP MLAAAHNLHN ELKQWSSQEN DIVAAAKRMA ILMARLSQLV RGEGGTKKDL 240
  241 INCSKAIADS SEEVTRLAVQ LARLCTDIKM RTALLQVSER IPTIATQLKV LSTVKATMLG 300
  301 SANVIGPYGQ PVEGSEEDDE AMQQLVHNAQ NLMQSVKDVV RAAEAASIKI RTNSGLRLRW 360
  361 LRKPMWSNF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.39794
Match: 1tr2A
Description: Crystal structure of human full-length vinculin (residues 1-1066)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle