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View Structure Prediction Details

Protein: hil-2
Organism: Caenorhabditis elegans
Length: 173 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hil-2.

Description E-value Query
Range
Subject
Range
hil-2 - histone H1.2 status:Partially_confirmed UniProt:P15796 protein_id:AAM44399.1
196.0 [0..1] [171..1]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFPFSRLFS FGVEHETGYV SRQSGRGRVY KGGGYSPFTI TFQVSTHRST MSDVTVAETP  60
   61 AVKTPTKAPK APKSKTTKEP KAKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAHPPFINM VTAAATKKPV AKKPVAKKAA TGEKKAKKTT VAKKTGDKVK KAKSPKKIAK  60
   61 PAAKKVAKSP AKKAAPKKAP AKKAAAPKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.045757
Match: 1hstA
Description: Histone H5, globular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.835523092977445 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009
nucleic acid binding 0.37117756729668 bayes_pls_golite062009
DNA binding 0.3118855114645 bayes_pls_golite062009

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