| Protein: | CE32000 |
| Organism: | Caenorhabditis elegans |
| Length: | 705 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32000.
| Description | E-value | Query Range |
Subject Range |
|
|
194.0 | [0..102] | [679..155] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MAFRQGYGVS SYPHYPQQQQ QIVFGQMRMP GQHTPAQQSS QQKPDSSPVF VGNISDKCSD 60
61 EFIRKILNEC GNVASWKRIK GSNGKLQGFG FCHFTDLEGT LRALRILHEF HLGDKKLTVK 120
121 PDEKVRDDLR KNAIE
|
| Detection Method: |  |
| Confidence: | 12.39794 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [136-320] |
1 11 21 31 41 51
| | | | | |
1 NRKRQGKKEL KLKHDELPAD EDDLKKDEEI RLKILHWMET DHKELFSITE DGELSDETKK 60
61 VKGHDSKIEK QTVPSSSSNP KKDEHKRNRN RRSRSRTRSR ERTSRRSRSK ESPRSKRSRR 120
121 SRSSSNSSSE SDSSSSRSSS YSSRSRSRTP QRSRTSKRRR SNSHASEDSD DAREKRAFKQ 180
181 MMLDK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [321-705] |
1 11 21 31 41 51
| | | | | |
1 KQAYLARLKR WESRERQMSK RYEREERKEK DRKKTLQKEG KRLKLFLEDY DDEKDDPKYY 60
61 TSSQFFQRKR DYEREREADQ KDRMQEQQEI EELKRQIMEE AANDESINIE EEARKRHKLK 120
121 EEEAMRKMRA DSGSPNPHQP LGQSANGEKS SSEEESDSEK TDVKKEIKDE IKEEPIDVDI 180
181 SEHVDPNTGS SGTNGNFGWK AIGDDSSLNT KINRPIANGN QNQPQIKKEA SPIPIAQRLS 240
241 GVFGNDDDED DVHSKKKLKP FEITREERMQ VMSAEEKREL TKQIIKTIPA TKDELFVHRI 300
301 EWDQLDGKWM NDRIRPWVAK KVTQFLGEED KSFCDFICDQ IEKQATPQEI LKDVAVIIDE 360
361 DAEQFVIKMW RLLIYEGQAR RLGIT
|
| Detection Method: | |
| Confidence: | 12.154902 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
