| Protein: | nhr-66 |
| Organism: | Caenorhabditis elegans |
| Length: | 526 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-66.
| Description | E-value | Query Range |
Subject Range |
|
|
294.0 | [0..1] | [526..185] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MDVIRLLDFM TASTDVFAAM DMSQKQSSPP GIFKIAKNEP SSSSNSQPGT PAMGDRRAVP 60
61 ACAICGTDST GIHFGVDACA ACSAFFRRTV VLNKDYSCNK GGKCTVVKDG SAGQKCRACR 120
121 FRKCISSGMD KNSVQHRRDA IGKYSAGVKR ELSPDAEFEP SAKVSTVSEP STSSGPSGGF 180
181 NQN
|
| Detection Method: |  |
| Confidence: | 24.69897 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [184-526] |
1 11 21 31 41 51
| | | | | |
1 VSSPAGIPRV PSTLRTTQAS TCMNSACGQK SVLHELICRQ NFLTEQRQLF YAGCLGDWFR 60
61 KPSSIENQTL SELTDFSSCM FHLWKIEPRL AADFMNRNRY LDPLPIVEKL KIYRNFVIMR 120
121 QSVEEPYLTW RHGGLEKRWF VMPNNTYIDF NNIAKYFENG ALKDLKLDYE TTTNLFLPSF 180
181 THAMDTIGEK MKKNNITETE LTILLGLVLL DPGIYGIHES TRKFLKRIRD QLIHDVYMYY 240
241 EDEMSHLYDP EIRMADIFML VAAIKIHSIK TSENMHMLRV FDLIPADACF NQMLDVESVN 300
301 VSPDGQKDSE AEQGPSPVSV PEAARGSYQD DDMPPVLEKN CDL
|
| Detection Method: | |
| Confidence: | 39.09691 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
