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View Structure Prediction Details

Protein: yrs-1
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for yrs-1.

Description E-value Query
Range
Subject
Range
SYY_BACCA - Tyrosine--tRNA ligase OS=Bacillus caldotenax GN=tyrS PE=3 SV=1
314.0 [0..2] [325..96]

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Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNSRKVTDQ ICKIFENAPG SSEKPIIVNN NDWLGKISLR DFLRECKNMQ VGKMLRMNTI  60
   61 KNRLEVGLSY TEFSYQTMQA FDWYTLSEKY GCRFQLGGYD QLGHLDFGAH YIKKMMNQAF 120
  121 AAGVCFPILT DSTGAKLGKS EGGGALWLDA TKTSPFHFYQ FFAQLHDDKA EELLLLFSLQ 180
  181 DIEHIRDVLK NHRSNLGQWI AQRELAAEIT RIVHGKEGLE VAMRCTKAMF GAKKADLSGL 240
  241 SRSEVLQLFR TTIDLKKENV ATMGQLADAS RLGSGKGHLL MQQGAFSVNG EKKRSPSESI 300
  301 ADVFLENASD LTLVCWGKRG YQLVRWV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.30103
Match: 2ts1A
Description: STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.84668360172717 bayes_pls_golite062009
ligase activity 0.41353894226697 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.1911539125531 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.1911539125531 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.178548924377401 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle