| Protein: | apx-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 515 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apx-1.
| Description | E-value | Query Range |
Subject Range |
|
|
346.0 | [0..34] | [504..2083] |
|
Region A: Residues: [1-419] |
1 11 21 31 41 51
| | | | | |
1 MTNFSSLLTT IFLCIISSAT GSGTIELLIS SPQTVLVEPT VCANFECAAP DDLSLARKVQ 60
61 RRVPLRFGTG QYHGEARERI DLHLKIIEPT SNEILALQHH RPAADTEWNS DAPIVIETSR 120
121 GFNVTVQLRN LCSSNYHGKR CNRYCIANAK LHWECSTHGV RRCSAGWSGE DCSNPICAGG 180
181 CSNRGRCVAP NQCSCADGFN GTRCEQCLPR AGCVNGDCVN ETPNTCKCRD GFIGDRCDID 240
241 IKICSLEKPC ANGGICSIDS SSSTGYKCHC PFEFVGSQCK TPLSKVRCSA EHVCKNGGAC 300
301 ISMDDTNIQC KCRRGFSGKF CEIGNHGDCS AMRCSAGETC QISGDFAICV ENDELLLTTN 360
361 KPAETTKSVE KWREPRKTAN DEQASDELQL RLIAAICVLF SVCVIGLALV SFFFYMHSF
|
| Detection Method: |  |
| Confidence: | 8.69897 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ErbB-2 class receptor binding | 2.49988032150831 | bayes_pls_golite062009 |
| receptor binding | 2.31571280660349 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 2.14752073450101 | bayes_pls_golite062009 |
| binding | 2.14092582858845 | bayes_pls_golite062009 |
| protein binding | 1.87564165872234 | bayes_pls_golite062009 |
| signal transducer activity | 1.48171797015526 | bayes_pls_golite062009 |
| molecular transducer activity | 1.48171797015526 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 1.08974638257724 | bayes_pls_golite062009 |
| growth factor activity | 0.402016723620225 | bayes_pls_golite062009 |
| pattern binding | 0.0196006376432096 | bayes_pls_golite062009 |
|
Region A: Residues: [420-515] |
1 11 21 31 41 51
| | | | | |
1 SKWKHPSSQQ AGGSTILPTT TSIPMSTTSS GTGSPVYKVC IIDSEHRGNA PGSSSDSEPD 60
61 HHCPPPHRHS PPPAYSSLVL YKKVPMAADD ESSFRV
|
| Detection Method: | |
| Confidence: | 5.522879 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
