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View Structure Prediction Details

Protein: coq-6
Organism: Caenorhabditis elegans
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq-6.

Description E-value Query
Range
Subject
Range
gi|39594578, gi|... - gi|39594578|emb|CAE72156.1| Hypothetical protein CBG19254 [Caenorhabditis briggsae], gi|187024495|em...
gi|157764548 - gi|157764548|ref|XP_001674617.1| Hypothetical protein CBG19254 [Caenorhabditis briggsae AF16]
282.0 [0..1] [451..1]

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Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPGGTIIC ARNASSYYDT VIVGGGMVGN AMACSLGANK SFQSKSVLLL DAGRSPSLAS  60
   61 FKPGAPFNNR VVATSPTSID TFKKLGVWDQ INSHRTKKVN RLFVFDSCST SEIEFERGQQ 120
  121 EEVAFIIEND LIVGSLYEKL AEYKNVDVKT GAKVEDCSIP NALENMATIK LENGDVIETS 180
  181 LLIGADGVNS KVRHASNLDY TTFNYNQHGL VAIVNIETAN GKNETAWQRF TTLGPVALLP 240
  241 LSDTVSGLTW STSPEEAQRL KQLPSDQFVD ELNSALFSQN NQIPLVNQTI FALNRMNPFR 300
  301 TETFGRKAEG TTPPHVITVQ DKSRASFPLG FGNAHSYITT RCALIGDAAH RMHPLAGQGV 360
  361 NLGWSDVQIL DKVLGDAVRE GADIGSITYL REYDSAAQKH NLPVMVSVDL LNRLYRTDAP 420
  421 AIVAARAFGL NAFNSLGPVK NFLMNYLSAH R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.09691
Match: 1bf3A
Description: P-HYDROXYBENZOATE HYDROXYLASE (PHBH) MUTANT WITH CYS 116 REPLACED BY SER (C116S) AND ARG 42 REPLACED BY LYS (R42K), IN COMPLEX WITH FAD AND 4-HYDROXYBENZOIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 1.94752631746117 bayes_pls_golite062009
oxidoreductase activity 1.52511707514198 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.18990628739838 bayes_pls_golite062009
antioxidant activity 1.12347155061135 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 0.876978863121464 bayes_pls_golite062009
binding 0.850689563354756 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors 0.643810447309487 bayes_pls_golite062009
protein binding 0.370064403093958 bayes_pls_golite062009
NADPH-adrenodoxin reductase activity 0.23045510393832 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.130601418359425 bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity 0.0438965603843511 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle