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View Structure Prediction Details

Protein: CE31550
Organism: Caenorhabditis elegans
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31550.

Description E-value Query
Range
Subject
Range
gi|157768534 - gi|157768534|ref|XP_001676088.1| Hypothetical protein CBG17520 [Caenorhabditis briggsae AF16]
gi|39594901, gi|... - gi|39594901|emb|CAE70769.1| Hypothetical protein CBG17520 [Caenorhabditis briggsae], gi|187025682|em...
339.0 [0..1] [459..1]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVSFGGSD SQFQSLDPAP GYSDDASGYP DIEVIDNEDE MYIDEETYEY LTNHYFRAGH  60
   61 DGCDEYTNLT TFHGMIRVFN SRNCPSLIFW CLVVTTCLVF YIMVCGTMIK TYSTQPSFMR 120
  121 INETKSHRAE NNIELCS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.99
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [138-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKQLTCNEIL KENKQMTCKE VDAYCVSIRF STKTKIRLKK KGLYFKHGTE EDVHYLSSKP  60
   61 HTHHMIRLKL IQIDRLNLGR APCTTNWREI TWIEKDSIPD YRYSLNMCEN IRFELTRKVE 120
  121 YLQYDFPCYP SCSEIKYQVS KSKLRHSSDS VVITFSVLPT ITLMQETRKT TLIDILCYLG 180
  181 GASSLFMGCS CVTLMEMFVF LFKLVAKSAC SQEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #3
Region A:
Residues: [352-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPDDSFYND KIEFEYSDHR NKRRYAIFDR ETMEKYLISN NSIDVKSINL DKRLSVFSVK  60
   61 KAPKLRALKD NRNFDKIDIF DEGISE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [438-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDAKNEVALS QKDECSVEYQ DEKMDTLGEI PLENRRPLRP QLRRCSTATS FASHTSKGSS  60
   61 SLTVRSYAPN QQKRRMSKAF TKNMPMNDF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle